Used Mass Spec in Mass Spectrometry
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Thermo Fisher Scientific TSQ Quantum Mass Spectrometer System
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Elucidating the power of mass spectrometry
Mass spectrometry is an indispensable technique used to analyze biomolecules. From analysis of glycans, lipids, proteins, peptides, to oligonucleotides, a mass spectrometer can help clarify the structure and chemical properties of different molecules.
A mass spectrometer is an instrument that measures the masses of individual molecules that have been converted to ions or molecules that have been electrically charged. This instrument helps scientists identify molecules in solids, liquids, and gases. It is also used to determine the quantity of each type of molecule in a mixture as well as which atoms comprise a molecule and how they are arranged.
A mass spec is composed of three main parts:
- Ion Source – ionizes chemicals or compounds to generate charged molecules or fragments.
- Mass Analyzer – takes the ionized chemicals or compounds and separates them based on charge to mass ratios.
- Ion Detector – detects the presence of the ionized chemicals or compounds in the air and recording their quantity.
Below are the basic steps for mass spectroscopy:
- Ionization – Molecules must be charged in order to be measured by a mass spectrometer. So the first step in mass spectrometry is ionization. Ionization occurs when an atom’s electron or electrons is removed to give a positive ion (mass specs always work with positive ions). This is done by introducing the molecules into a high vacuum tube system where the particles are collided with a beam of high speed electrons. Note though that if samples are not already a gas, they must be vaporize and in a free moving gaseous form.
- Acceleration – The ionized molecules are accelerated down a tube (from + to – plates) and then through a very strong magnetic field in order to produce the same kinetic energy.
- Deflection – The tube is surrounded by a curved magnetic field that causes the cation to be deflected in proportion to its mass-to-charge ratio (m/z). The magnetic field can be varied to change the path of deflection. It is the molecular mass, charge, and strength of the magnetic field that determines the flight path or deflection path of the ion.
- Detection – the ion detection system generates small electrical currents when the ions hit it.
There are several different types of ion sources used for different analytical instruments and applications. Below are a few sources to choose from:
|Electron Ionization (EI)||Used for small (less than 600 mw) neutral organic molecules that do not easily decompose.|
|Chemical Ionization (CI)||Used when no molecular ion is observed in EI mass spectrum of a compound.|
|Electrospray Ionization (ESI)||Used for molecules that have a tendency for fragmentation. Can produce multiply charged ions.|
|Atmospheric Pressure Chemical Ionization (APCI)||Used for generating ions directly from solution and is capable of analyzing relatively non-polar compounds.|
|Matrix Assisted Laser Desorption/Ionization (MALDI)||Used for biomolecules and large organic molecules which tend to be fragile. Similar to ESI, but produces fewer multiply-charged ions.|
Each mass analyzer has its own special characteristics and application, along with benefits and limitations. Choosing a mass analyzer should be based on application, cost and performance desired. Below are 4 general types of mass analyzers that can be used to separate ions along with a few guidelines on each:
|Double focusing Magnetic Sector||
|Time of Flight||
|Quadrapole Ion Trap||
|Ion Cyclotron Resonance||